Molegro Virtual Docker is a good software for predicting protein ligand interactions. In a simple graphical environment, the program enables the preparation of molecules, the prediction and investigation of potential junctions with different ligands. Connections are displayed in a high quality 3D graphics environment. Tutorial 1: A Simple Docking Run. – Import molecules into Molegro Virtual Docker (MVD). – Detect potential binding sites and setup the search space. – Run a docking simulation using the Docking Wizard. – Inspect the docking results using the Pose Organizer. Download for offline viewing: mvd-tutorial1.swf. Molegro Virtual Docker 6.0 20.6 MB. Molegro Virtual Docker is an integrated platform for predicting protein – ligand interactions. Molegro Virtual Docker handles all aspects of the docking process from preparation of the molecules to determination of the potential binding sites of the target protein, and prediction of the binding modes of the ligands.

Basic Tutorials

1 Introduction to Molegro Virtual Docker Molegro Virtual Docker (MVD) is an integrated environment for studying and predicting how ligands interact with macromolecules. The identification of ligand binding modes is done by iteratively evaluating a number of candidate solutions (ligand conformations) and estimating the.

The tutorials below offer a quick way to get to learn the basic features of Molegro Virtual Docker.

The tutorials require a Macromedia Flash Player.

Tutorial 1: A Simple Docking Run

Content: – Import molecules into Molegro Virtual Docker (MVD). – Detect potential binding sites and setup the search space. – Run a docking simulation using the Docking Wizard. – Inspect the docking results using the Pose Organizer. View tutorial (3 MB Flash Movie, 7 minutes) Download for offline viewing: mvd-tutorial1.swf

Tutorial 2: Inspecting the Docking Results

Content: – How to inspect the results of a docking run with MVD. View tutorial (4 MB Flash Movie, 6 minutes) Download for offline viewing: mvd-tutorial2.swf

Molegro Virtual Docker Ppt

Molegro Virtual Docker

Molegro Virtual Docker Tutorial

Tutorial 3: Visualization in MVD

Molegro Virtual Docker 6.0.1 Download

Content: – Navigating in the 3D view. – Using Visualization Presets and Styles. – Work with surfaces and backbone representations. – Use Clipping Planes, Labels, and the Sequence Viewer. View tutorial (5 MB Flash Movie, 14 minutes) Download for offline viewing: mvd-tutorial3.swf